Profile pic 2014

Dr Bon-Kyoung Koo

Homeostatic Regulation of Adult Stem Cells


Laboratory Location:

Stem Cell Institute, Gleeson Building


• Roxana Micsik (Post-Doc) • Ya-Lin Huang (Post-Doc) • Amanda Andersson-Rolf (MRC PhD Student) • Juergen Fink (WT PhD Student)  • Alessandra Merenda (MC ITN PhD Student) • Gianmarco Mastrogiovanni (MC ITN PhD Student)

Bon-Kyoung Koo has the unique experience of studying the role of endosomal E3 ubiquitin ligases in two major signalling pathways, which makes him a leading expert in this field. He is an experienced mouse geneticist with broad experience in the field of E3 ubiquitin ligases.

Bon-Kyoung is part of the Marie Curie Initial Training Network "WntsApp" and was  awarded the Sir Henry Dale Fellowship in 2013. This Fellowship brings together the Royal Society and the Wellcome Trust to support the future leaders of biomedical research.

Lab Information

Homeostatic turnover in adult tissues is governed by the interplay of a multitude of signalling pathways that are often triggered by niche cells providing diverse ligands to support stem cells. Upon tissue damage, adult stem cells rapidly proliferate to restore the loss and reinstate homeostasis; regulatory signalling that governs proliferation and differentiation of stem cells enable this damage response. De-regulation of these processes on the other hand results in either hyperplasia or loss of stem cells.

An important class of modulators are E3 ubiquitin ligases. Mib1, an E3 for Notch ligands, has a crucial role in Notch ligand activation in niche cells that, in turn, promotes Notch signalling in stem cells. RNF43 and ZNRF3 attenuate Wnt activation in intestinal stem cells by functioning as E3s for Wnt receptors. Thus to date, we have learned about E3 ligases working in the Notch and Wnt pathways in adult stem cells. In light of this, it seems probable that other E3 ligases, with important roles in adult stem cell biology, remain to be identified. Our research focus is on identifying and understanding the role of novel E3 ubiquitin ligases in homeostatic regulation of stem cells.

We have identified a novel quiescent Troy+ epithelial stem cell population in the stomach. Upon tissue damage, Troy+ stem cells actively divide to regenerate lost cell types. The discovery of Troy+ stomach stem cells enables us to investigate how an adult tissue can retain its homeostasis after various types of injury. This study will help us understanding how homeostasis is achieved in the adult stomach and in other tissues, which will potentially lead to the development of successful adult stem cell therapy.


Koo Lab 2014

Stomach epithelial cells labelled in four colours.

Image: Juergen Fink



Intestinal stem cells (purple) and Paneth cells (supporting cells, brown)

(Photographed by Bon-Kyoung Koo)


For students planning to join our lab

A 'Must-Read' before you apply:

I will only consider those who made a deep thought about joining my lab.

Another one:

Review: Stem cells marked by the R-spondin receptor LGR5


We are part of the Marie Curie Initial Training Network "WntsApp"

Full list of publications: PubMed & Google Scholar

Awards & Grants

Sir Henry Dale Fellowship (by the Wellcome Trust & the Royal Society)

ERC starting grant (by European Research Council) 





Plain English

Throughout our life, our body needs constant renewal of cells to maintain our health. Modern biology and medical science have identified stem cells in most adult tissues as continuous source of regeneration. Interestingly, these stem cells require tight control to allow the production of new cells only in appropriate conditions. Among many regulators, E3 ubiquitin ligases (E3s) are genuine sweepers in cells. These molecules clean other proteins that are no longer required for growth and function of stem cells.

Key Publications

Selected Publications

Koo BK*†, van Es JH*, van den Born M, and Clevers H† Porcupine inhibitor suppresses paracrine Wnt-driven growth of Rnf43;Znrf3-mutant tumors PNAS. 2015 May 28. († corresponding authors)

Schwank G*, Koo BK* et al. Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients. Cell Stem Cell. 2013 Dec 5;13(6):653-8. F1000

Stange DE*, Koo BK* et al. Differentiated Troy+ chief cells act as 'reserve' stem cells to generate all lineages of the stomach epithelium. Cell. 2013 Oct 10;155(2): 357–368 F1000

Koo BK et al. Tumour suppressor RNF43 is a stem cell E3 ligase that induces endocytosis of Wnt receptors. Nature. 2012 Aug 30;488(7413):665-9. F1000

Kim HA*, Koo BK* et al. Notch counteracts Wnt-beta-catenin signaling through chromatin modification in mouse and human colorectal cancer J Clin Invest. 2012 Sep 4;122(9):3248-59.

Koo BK*, Stange DE* et al. Controlled gene expression in primary Lgr5 organoid cultures Nature Methods. 2011 Dec 4;9(1):81-3.

Koo BK*, Lim HS* et al. Notch signaling promotes the generation of EphrinB1-positive intestinal epithelial cells. Gastroenterology. 2009 Jul;137(1):145-55.

Koo BK*, Lim HS* et al. Mind bomb 1 is essential for generating functional Notch ligands to activate Notch. Development. 2005 Aug;132(15):3459-70.

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